STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY52377.1Uncharacterized conserved protein YndB, AHSA1/START domain; Non-canonical start codon; manually curated. (238 aa)    
Predicted Functional Partners:
SDY52410.1
Transcriptional regulator, RpiR family.
       0.552
SDZ40695.1
Hypothetical protein.
  
     0.473
SDZ30744.1
Glycosyl hydrolases family 15.
  
     0.447
SDZ43101.1
Uncharacterized conserved protein.
 
     0.447
SDY52483.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  
    0.438
SDY52443.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
    0.411
SDY52530.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.409
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.