STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY53338.1D-threo-aldose 1-dehydrogenase. (334 aa)    
Predicted Functional Partners:
SDZ27117.1
L-fuconolactonase.
  
  0.941
SDY53370.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    0.821
SDY47904.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
  0.758
SDZ27068.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
  0.709
SDY53404.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.664
SDY53433.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.664
SDY53459.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
       0.664
SDY85899.1
L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    0.644
SDY53307.1
DNA-binding transcriptional regulator, GntR family.
       0.618
SDZ39385.1
UDPglucose 6-dehydrogenase.
   
 
  0.615
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.