STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY56391.1TIGR04076 family protein. (104 aa)    
Predicted Functional Partners:
SDY38816.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.898
SDZ34706.1
CO or xanthine dehydrogenase, Mo-binding subunit.
    
  0.842
SDY56330.1
Methylenetetrahydromethanopterin reductase.
       0.773
SDY56361.1
TIGR04076 family protein.
      
0.773
SDY56416.1
Acyl-CoA dehydrogenase.
       0.773
SDZ51199.1
Phosphotransacetylase.
     
 0.770
SDZ52939.1
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 0.740
SDZ04509.1
Glutamate synthase (NADH) large subunit.
  
 
 0.677
SDY56302.1
Quinol monooxygenase YgiN.
       0.655
SDZ15184.1
2-oxoisovalerate dehydrogenase E1 component.
   
 
  0.637
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.