STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY60425.1Glycoside/pentoside/hexuronide:cation symporter, GPH family. (509 aa)    
Predicted Functional Partners:
SDY60360.1
Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.885
SDY66410.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
    0.728
SDY60392.1
Predicted dehydrogenase.
       0.689
SDZ48047.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.638
SDY60963.1
Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.634
SDY60449.1
Transcriptional regulator, LacI family.
 
     0.625
SDY60334.1
Uncharacterized membrane protein YeiH.
       0.491
SDZ50982.1
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.467
SDZ54675.1
Beta-galactosidase.
 
  
 0.452
SDY66205.1
Glucuronate isomerase.
 
   
 0.424
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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