STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY64247.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (323 aa)    
Predicted Functional Partners:
SDY64532.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.814
SDZ04509.1
Glutamate synthase (NADH) large subunit.
     
 0.796
SDZ42085.1
Ferredoxin-NADP reductase.
   
 0.778
SDY64274.1
Transcriptional regulator, TetR family; Manually curated.
 
     0.629
SDZ25141.1
Ferredoxin-NADP reductase.
   
  0.513
SDZ32449.1
Pyridoxamine 5'-phosphate oxidase.
   
  0.513
SDZ34622.1
Ferredoxin-NADP reductase.
   
  0.513
SDZ01975.1
[acyl-carrier-protein] S-malonyltransferase.
   
  0.508
SDZ01923.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
   
 0.497
SDZ15425.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
0.497
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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