STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY69865.1Transcriptional regulator, GntR family. (130 aa)    
Predicted Functional Partners:
SDY69836.1
Transcriptional regulator, AsnC family.
  
    0.782
SDZ23935.1
Transcriptional regulator, HxlR family.
   
    0.705
SDZ34690.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
    0.606
SDY73513.1
Zinc uptake regulator, Fur family; Belongs to the Fur family.
   
  
 0.584
SDY69807.1
N-Dimethylarginine dimethylaminohydrolase.
       0.528
SDZ05664.1
NAD-dependent protein deacetylase, SIR2 family.
  
    0.523
SDY69780.1
Ornithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.493
htpX
Heat shock protein. Metallo peptidase. MEROPS family M48B; Belongs to the peptidase M48B family.
     
 0.456
SDY53831.1
Hypothetical protein.
   
    0.420
SDY76779.1
Iron (metal) dependent repressor, DtxR family.
   
    0.420
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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