STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY76409.1Predicted glycosyl hydrolase, GH43/DUF377 family. (357 aa)    
Predicted Functional Partners:
SDY76347.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.950
SDY76318.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.946
SDY76378.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
     0.943
SDY76435.1
Hypothetical protein.
 
     0.910
SDY76292.1
Transcriptional regulator, LacI family.
 
     0.831
SDY63708.1
2-keto-3-deoxy-phosphogluconate aldolase; Manually curated.
   
  
 0.508
SDZ26954.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
   
  
 0.508
SDY76459.1
Aminoglycoside 6'-N-acetyltransferase.
 
     0.450
SDY58308.1
Phosphoglycolate phosphatase, HAD superfamily.
  
     0.439
SDY76256.1
Hypothetical protein.
       0.420
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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