STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY80248.1Regulator of RNase E activity RraA. (232 aa)    
Predicted Functional Partners:
SDY62190.1
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.
    
  0.846
SDY63220.1
Aminocarboxymuconate-semialdehyde decarboxylase.
    
 0.808
SDZ45680.1
Aminocarboxymuconate-semialdehyde decarboxylase.
    
 0.808
SDZ54018.1
Acetolactate synthase large subunit; Belongs to the TPP enzyme family.
  
  
  0.804
SDZ52951.1
Hypothetical protein.
    
 0.717
SDY72590.1
N-acetylglucosaminyl deacetylase, LmbE family.
    
 0.693
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
      0.583
SDY80276.1
Uncharacterized protein, contains Zn-finger domain of CHY type.
       0.558
SDY80303.1
Biotin transport system permease protein.
       0.558
SDY80331.1
Biotin transport system ATP-binding protein.
       0.558
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.