STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY83228.1Carbohydrate binding module (family 35). (746 aa)    
Predicted Functional Partners:
SDZ25349.1
Sulfatase-modifying factor enzyme 1.
  
     0.632
SDZ25292.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.570
SDY83127.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.545
SDZ27169.1
Polysaccharide deacetylase.
  
  
  0.542
SDY83250.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.519
SDY83272.1
Uncharacterized conserved protein.
       0.519
SDY67923.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.501
SDZ25407.1
Enterochelin esterase.
  
  
  0.500
SDZ25311.1
ADP-ribosylglycohydrolase.
  
     0.460
SDZ43531.1
DNA-binding transcriptional regulator, PucR family.
  
     0.448
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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