STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY83953.1Hypothetical protein. (161 aa)    
Predicted Functional Partners:
kptA
Putative RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
       0.723
SDZ01708.1
Magnesium transporter NIPA.
  
     0.714
SDZ28799.1
Hypothetical protein.
  
     0.683
SDY59746.1
Transcriptional regulatory protein, C terminal.
  
     0.679
SDY41199.1
Protein of unknown function; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.659
SDZ04392.1
Hypothetical protein.
  
     0.652
SDZ33089.1
Hypothetical protein.
  
     0.637
SDZ35666.1
Hypothetical protein.
  
     0.634
SDY72866.1
Uncharacterized membrane protein HdeD, DUF308 family.
  
     0.628
SDY40908.1
Hypothetical protein.
  
     0.604
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.