STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY84510.1Uncharacterized conserved protein. (125 aa)    
Predicted Functional Partners:
SDY84478.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.885
SDY83250.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.783
SDZ33045.1
RNA polymerase, sigma subunit, ECF family; Non-canonical start codon; manually curated; Belongs to the sigma-70 factor family.
 
     0.783
SDZ43112.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.783
SDY83272.1
Uncharacterized conserved protein.
  
     0.763
SDZ43101.1
Uncharacterized conserved protein.
  
     0.680
SDY84537.1
Uncharacterized HhH-GPD family protein.
       0.532
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.