STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY99376.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (529 aa)    
Predicted Functional Partners:
SDY99402.1
Peptide/nickel transport system permease protein.
 
 0.969
SDZ00399.1
Peptide/nickel transport system permease protein.
 
 0.949
SDZ49558.1
Peptide/nickel transport system permease protein.
 
 0.934
SDY99447.1
Peptide/nickel transport system permease protein.
 
 0.930
SDY48768.1
Peptide/nickel transport system permease protein.
 
 0.921
SDY73248.1
Peptide/nickel transport system permease protein.
 
 0.896
SDY99471.1
Peptide/nickel transport system substrate-binding protein.
 
 0.866
SDZ28689.1
Peptide/nickel transport system permease protein.
 
 0.851
SDZ12031.1
Peptide/nickel transport system permease protein.
 
 0.850
SDZ42250.1
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
 
 
0.833
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.