STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ05287.1Iron-regulated ABC transporter ATPase subunit SufC. (254 aa)    
Predicted Functional Partners:
SDZ05232.1
Iron-regulated ABC transporter membrane component SufB.
     0.993
SDZ05250.1
Iron-regulated ABC transporter permease protein SufD.
     0.982
SDZ52319.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
     0.962
SDZ05306.1
Metal-sulfur cluster biosynthetic enzyme.
 
     0.933
SDZ05268.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
       0.774
SDZ52307.1
Nitrogen fixation protein NifU.
  
     0.748
SDZ53926.1
ABC-type sugar transport system, ATPase component.
  
 
 
0.590
SDZ05212.1
Cytochrome c oxidase assembly protein subunit 15.
       0.503
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.499
SDZ42018.1
Selenocysteine lyase/Cysteine desulfurase.
  
     0.481
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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