STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ06185.1SPFH domain, Band 7 family protein. (372 aa)    
Predicted Functional Partners:
ftsH
Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.987
SDZ06206.1
Membrane protein implicated in regulation of membrane protease activity.
 
  
 0.969
SDZ06163.1
Glycerophosphoryl diester phosphodiesterase.
     
 0.810
SDZ01153.1
Predicted Zn-dependent peptidase; Belongs to the peptidase M16 family.
  
 0.804
SDY71765.1
Membrane associated serine protease, rhomboid family.
   
 0.772
SDZ57123.1
Flotillin.
     
 0.731
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.653
SDZ30158.1
ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family.
   
 0.653
SDZ35799.1
Protein of unknown function.
   
    0.644
SDZ06230.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
   
   0.617
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.