STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ08274.1Protein of unknown function. (427 aa)    
Predicted Functional Partners:
SDZ08253.1
Uncharacterized conserved protein YqgV, UPF0045/DUF77 family.
       0.800
SDZ33089.1
Hypothetical protein.
  
     0.682
SDY40908.1
Hypothetical protein.
  
     0.598
SDZ01708.1
Magnesium transporter NIPA.
  
     0.593
SDZ03729.1
Protein of unknown function.
  
     0.574
SDZ28799.1
Hypothetical protein.
  
     0.567
SDZ41623.1
Glycosyltransferase, GT2 family.
  
     0.560
SDZ08292.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
       0.544
SDZ08489.1
Mycothiol system anti-sigma-R factor.
  
     0.517
SDY72496.1
Hypothetical protein.
  
     0.482
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.