STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ23848.1Carbohydrate ABC transporter membrane protein 2, CUT1 family. (283 aa)    
Predicted Functional Partners:
SDZ23825.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  0.997
SDZ23804.1
Multiple sugar transport system substrate-binding protein.
 
  0.993
SDY65003.1
Raffinose/stachyose/melibiose transport system permease protein.
 0.964
SDY42400.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 0.957
SDY40691.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 0.954
SDY70862.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 0.954
SDY42754.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 0.951
SDZ26062.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  0.937
SDY52598.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 0.933
SDY79581.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 0.931
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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