Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ27748.1 | SDZ27772.1 | SAMN05216554_2988 | SAMN05216554_2990 | NADPH:quinone reductase. | TatD DNase family protein. | 0.572 |
SDZ27748.1 | SDZ27802.1 | SAMN05216554_2988 | SAMN05216554_2992 | NADPH:quinone reductase. | Putative cell wall binding repeat 2. | 0.428 |
SDZ27748.1 | metG | SAMN05216554_2988 | SAMN05216554_2989 | NADPH:quinone reductase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.572 |
SDZ27748.1 | rsmA | SAMN05216554_2988 | SAMN05216554_2991 | NADPH:quinone reductase. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.572 |
SDZ27748.1 | rsmI | SAMN05216554_2988 | SAMN05216554_2987 | NADPH:quinone reductase. | 16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.542 |
SDZ27772.1 | SDZ27748.1 | SAMN05216554_2990 | SAMN05216554_2988 | TatD DNase family protein. | NADPH:quinone reductase. | 0.572 |
SDZ27772.1 | SDZ27802.1 | SAMN05216554_2990 | SAMN05216554_2992 | TatD DNase family protein. | Putative cell wall binding repeat 2. | 0.563 |
SDZ27772.1 | ffh | SAMN05216554_2990 | SAMN05216554_3016 | TatD DNase family protein. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.530 |
SDZ27772.1 | ispE | SAMN05216554_2990 | SAMN05216554_2994 | TatD DNase family protein. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.751 |
SDZ27772.1 | metG | SAMN05216554_2990 | SAMN05216554_2989 | TatD DNase family protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.965 |
SDZ27772.1 | nusA | SAMN05216554_2990 | SAMN05216554_2256 | TatD DNase family protein. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.492 |
SDZ27772.1 | rsmA | SAMN05216554_2990 | SAMN05216554_2991 | TatD DNase family protein. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.968 |
SDZ27772.1 | rsmI | SAMN05216554_2990 | SAMN05216554_2987 | TatD DNase family protein. | 16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.570 |
SDZ27772.1 | secA-2 | SAMN05216554_2990 | SAMN05216554_3732 | TatD DNase family protein. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.544 |
SDZ27772.1 | tmk | SAMN05216554_2990 | SAMN05216554_3580 | TatD DNase family protein. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.639 |
SDZ27802.1 | SDZ27748.1 | SAMN05216554_2992 | SAMN05216554_2988 | Putative cell wall binding repeat 2. | NADPH:quinone reductase. | 0.428 |
SDZ27802.1 | SDZ27772.1 | SAMN05216554_2992 | SAMN05216554_2990 | Putative cell wall binding repeat 2. | TatD DNase family protein. | 0.563 |
SDZ27802.1 | ispE | SAMN05216554_2992 | SAMN05216554_2994 | Putative cell wall binding repeat 2. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.463 |
SDZ27802.1 | metG | SAMN05216554_2992 | SAMN05216554_2989 | Putative cell wall binding repeat 2. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.563 |
SDZ27802.1 | rsmA | SAMN05216554_2992 | SAMN05216554_2991 | Putative cell wall binding repeat 2. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.563 |
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