STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ28043.1L-ribulose 5-phosphate 4-epimerase. (245 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 0.995
SDY79085.1
L-fuculose-phosphate aldolase.
  
  
  0.907
SDZ28060.1
Sugar (pentulose or hexulose) kinase.
 
 
  0.890
SDZ16915.1
L-xylulokinase.
 
 
  0.881
xylB
Xylulokinase.
  
 
 0.858
SDZ24833.1
L-fuculose-phosphate aldolase.
  
  
  0.853
SDZ04249.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.825
SDY66205.1
Glucuronate isomerase.
     
 0.823
SDZ35884.1
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
  
 
 0.779
SDY58244.1
Methylthioribose-1-phosphate isomerase; Belongs to the eIF-2B alpha/beta/delta subunits family.
 
 
 0.769
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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