STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ34609.1Transcriptional regulator, XRE family with cupin sensor. (196 aa)    
Predicted Functional Partners:
SDZ34622.1
Ferredoxin-NADP reductase.
 
     0.820
SDZ15010.1
Transcriptional regulator, XRE family with cupin sensor.
  
     0.756
SDZ53981.1
Transcriptional regulator, XRE family with cupin sensor; Manually curated.
  
     0.746
SDZ34594.1
Cytosine deaminase.
 
     0.740
SDZ34552.1
Hypothetical protein.
 
     0.653
SDZ34565.1
NitT/TauT family transport system permease protein.
 
     0.578
SDZ34581.1
NitT/TauT family transport system ATP-binding protein.
       0.506
SDY56691.1
Transcriptional regulator, XRE family with cupin sensor.
  
     0.502
SDZ34507.1
Creatinine amidohydrolase.
 
     0.485
SDZ34525.1
FAD/FMN-containing dehydrogenase.
 
     0.485
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.