STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ39347.1Predicted dehydrogenase. (360 aa)    
Predicted Functional Partners:
SDZ39361.1
Glycosyltransferase involved in cell wall bisynthesis; Manually curated.
 
    0.877
SDY60855.1
Predicted dehydrogenase.
  
     0.756
SDY47969.1
Inosose dehydratase.
 
 
  0.730
SDZ39318.1
Acetyltransferase (isoleucine patch superfamily); Manually curated.
 
 
  0.664
SDZ56745.1
Sugar phosphate isomerase/epimerase.
 
 
  0.656
SDZ41136.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.648
SDZ39374.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.639
SDY65163.1
Sugar phosphate isomerase/epimerase.
 
 
  0.629
SDZ39333.1
Hypothetical protein.
       0.616
SDZ39385.1
UDPglucose 6-dehydrogenase.
 
  
  0.590
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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