STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ41364.1Hypothetical protein. (830 aa)    
Predicted Functional Partners:
SDZ41406.1
SGNH hydrolase-like domain-containing protein, acetyltransferase AlgX.
  
    0.720
SDZ41039.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.697
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.636
SDZ29163.1
Maltooligosyl trehalose hydrolase.
   
  0.636
SDZ41149.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.622
SDZ41268.1
Glycosyltransferase involved in cell wall bisynthesis; Manually curated.
  
     0.611
SDZ41305.1
ABC-2 type transport system ATP-binding protein.
 
   0.608
SDZ41343.1
Hypothetical protein.
       0.603
SDZ41353.1
Hypothetical protein.
       0.603
SDY54663.1
dGTPase; Belongs to the dGTPase family. Type 2 subfamily.
  
     0.571
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.