STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ41767.1Predicted amidophosphoribosyltransferases. (236 aa)    
Predicted Functional Partners:
xerC
Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.918
SDZ43940.1
Competence protein ComEC.
 
  
 0.894
SDZ44947.1
Prephenate dehydrogenase.
   
  
 0.869
SDY42900.1
N-acetylglucosamine 6-phosphate deacetylase.
  
    0.803
SDZ48335.1
DNA processing protein.
 
 
 0.796
SDY70616.1
Oxygen-dependent protoporphyrinogen oxidase.
  
    0.795
SDZ28448.1
DNA protecting protein DprA.
 
 
 0.776
SDZ41745.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 
    0.707
SDZ09152.1
ABC-2 type transport system ATP-binding protein.
   
    0.703
SDZ41305.1
ABC-2 type transport system ATP-binding protein.
   
    0.703
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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