STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ43340.1Methyltransferase domain-containing protein. (299 aa)    
Predicted Functional Partners:
SDZ31644.1
Fibronectin type III domain-containing protein.
  
     0.774
SDZ42912.1
DNA-binding transcriptional regulator, CsgD family.
  
     0.773
SDZ53062.1
Pentapeptide repeat-containing protein.
  
     0.722
SDZ52449.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
     0.720
SDZ13004.1
Hypothetical protein.
  
     0.719
SDZ24237.1
Hypothetical protein.
  
     0.717
SDZ24260.1
Hypothetical protein.
  
     0.716
SDY52273.1
Hypothetical protein.
 
     0.710
SDZ15068.1
Ribose transport system substrate-binding protein.
  
     0.672
SDZ13044.1
Transcriptional regulator, TetR family.
  
     0.650
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.