STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ43718.1ABC-2 type transport system permease protein. (254 aa)    
Predicted Functional Partners:
SDZ43734.1
ABC-2 type transport system ATP-binding protein.
 
 0.970
SDZ43748.1
DNA-binding ferritin-like protein (Dps family).
 
     0.944
SDZ27637.1
ABC-2 type transport system permease protein.
 
 
0.920
SDZ43759.1
PadR family transcriptional regulator, regulatory protein PadR.
 
     0.883
SDZ27624.1
ABC-2 type transport system ATP-binding protein.
 
 0.834
SDZ29354.1
ABC-2 type transport system ATP-binding protein.
 
 0.790
SDZ43814.1
Osmoprotectant transport system substrate-binding protein.
    
  0.649
SDY87668.1
ABC-2 type transport system ATP-binding protein.
 
 0.634
SDZ40711.1
ABC-2 type transport system ATP-binding protein.
 
 0.625
SDZ43772.1
Osmoprotectant transport system ATP-binding protein.
     
 0.556
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.