STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ45555.1NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. (183 aa)    
Predicted Functional Partners:
SDY56203.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
  
     0.734
SDY87152.1
Probable F420-dependent oxidoreductase, Rv2161c family.
 
 
  0.691
SDZ42085.1
Ferredoxin-NADP reductase.
 
 
 0.506
SDZ45653.1
Acyl-CoA dehydrogenase.
  
  
  0.506
SDY56529.1
Acyl-CoA dehydrogenase.
  
  
  0.495
SDY56416.1
Acyl-CoA dehydrogenase.
  
  
  0.470
SDZ45569.1
Short-chain dehydrogenase.
       0.455
SDZ45542.1
O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
       0.437
SDZ45787.1
Catechol 2,3-dioxygenase.
  
 
  0.436
SDZ29817.1
Nitroreductase.
  
 
  0.417
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.