STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ45748.12-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (492 aa)    
Predicted Functional Partners:
SDZ45787.1
Catechol 2,3-dioxygenase.
 
   
 0.969
SDZ45736.1
2-oxohept-3-enedioate hydratase.
 
 
 0.963
SDZ45772.1
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.948
SDZ45761.1
Transcriptional regulator, GntR family.
 
    0.943
SDY79120.1
2-keto-4-pentenoate hydratase.
 
 
 0.884
SDZ43143.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
  
 
0.876
SDZ45723.1
2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.865
SDZ54018.1
Acetolactate synthase large subunit; Belongs to the TPP enzyme family.
 
  
 0.835
SDZ25388.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
    
  0.834
SDZ56678.1
2-oxo-hept-3-ene-1,7-dioate hydratase/2-keto-4-pentenoate hydratase.
 
 
 0.833
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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