STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ47532.1Hypothetical protein. (69 aa)    
Predicted Functional Partners:
SDZ47511.1
Na+/melibiose symporter; Manually curated.
 
     0.883
SDZ47523.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
       0.775
SDZ35365.1
Major Facilitator Superfamily protein.
  
     0.772
SDY48327.1
Na+/melibiose symporter.
  
     0.771
SDZ49492.1
Na+/melibiose symporter.
  
     0.767
SDY66149.1
MFS-type transporter involved in bile tolerance, Atg22 family.
 
     0.759
SDZ47543.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
    0.536
SDZ04392.1
Hypothetical protein.
  
     0.514
SDZ47556.1
Beta-glucosidase.
       0.452
SDZ47496.1
Transcriptional regulator, TetR family.
 
     0.447
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.