STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ51338.1Diguanylate cyclase (GGDEF) domain-containing protein. (831 aa)    
Predicted Functional Partners:
SDZ51431.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.923
SDZ03285.1
Ammonium transporter.
 
      0.740
SDZ51350.1
Endoglucanase; Belongs to the glycosyl hydrolase family 6.
       0.658
SDZ53062.1
Pentapeptide repeat-containing protein.
  
     0.495
SDZ31644.1
Fibronectin type III domain-containing protein.
  
     0.492
SDZ34075.1
NitT/TauT family transport system substrate-binding protein.
     0.484
SDZ50579.1
Adenylate cyclase, class 3.
 
   
 0.441
asd
Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.426
SDZ13004.1
Hypothetical protein.
  
     0.420
SDY58308.1
Phosphoglycolate phosphatase, HAD superfamily.
  
     0.414
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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