STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ52740.1tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like. (238 aa)    
Predicted Functional Partners:
SDY82025.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
  
 0.901
SDZ42085.1
Ferredoxin-NADP reductase.
  
 0.825
SDZ25141.1
Ferredoxin-NADP reductase.
  
 0.824
SDZ32449.1
Pyridoxamine 5'-phosphate oxidase.
  
 0.823
SDZ34622.1
Ferredoxin-NADP reductase.
  
 0.822
SDY70804.1
Beta-lactamase class A.
  
     0.648
SDZ52696.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily.
  
     0.646
SDZ02928.1
Protein of unknown function.
  
     0.611
SDY72496.1
Hypothetical protein.
  
     0.604
SDZ52750.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
       0.587
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.