STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ54344.1Hypothetical protein. (224 aa)    
Predicted Functional Partners:
SDZ54329.1
Adenosine deaminase.
       0.773
SDZ54356.1
Nucleoside-binding protein.
       0.601
SDZ54369.1
Simple sugar transport system ATP-binding protein.
       0.601
SDZ54383.1
Adenine deaminase.
       0.601
SDZ54399.1
Nucleoside ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
       0.601
SDZ54411.1
Nucleoside ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
       0.601
SDZ54426.1
Transcriptional regulator, GntR family.
       0.601
SDZ54441.1
Acyl-CoA dehydrogenase.
       0.482
SDZ54317.1
tRNA(Arg) A34 adenosine deaminase TadA.
       0.451
SDZ54302.1
Predicted DNA-binding protein with PD1-like DNA-binding motif.
       0.409
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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