STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ55399.1Hypothetical protein. (536 aa)    
Predicted Functional Partners:
SDZ55369.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
     0.943
SDZ55378.1
Hypothetical protein.
 
     0.943
SDZ55388.1
Hypothetical protein.
 
     0.943
SDZ48609.1
Hypothetical protein.
 
     0.790
SDZ48622.1
Hypothetical protein.
 
     0.790
SDZ48633.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
     0.790
SDZ55410.1
Hypothetical protein.
       0.789
SDZ48270.1
Relaxase/Mobilisation nuclease domain-containing protein.
  
     0.765
SDZ55233.1
Relaxase/Mobilisation nuclease domain-containing protein.
  
     0.765
SDZ55359.1
Protein of unknown function.
       0.759
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.