STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ55457.1Peptidase family M23. (362 aa)    
Predicted Functional Partners:
SDZ55467.1
FHA domain-containing protein.
       0.773
SDZ55476.1
Hypothetical protein.
       0.773
SDZ55437.1
Putative peptide zinc metalloprotease protein.
 
 
   0.770
SDZ55369.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
     0.661
SDZ55448.1
Hypothetical protein.
       0.658
SDZ55388.1
Hypothetical protein.
 
     0.616
SDZ55399.1
Hypothetical protein.
 
     0.613
SDZ55378.1
Hypothetical protein.
 
     0.600
SDZ55485.1
Hypothetical protein.
       0.598
SDZ56529.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
  
 
   0.569
Your Current Organism:
Herbiconiux ginsengi
NCBI taxonomy Id: 381665
Other names: CGMCC 4.3491, DSM 19088, H. ginsengi, Herbiconiux ginsengi (Qiu et al. 2007) Behrendt et al. 2011, JCM 13908, Leifsonia ginsengi, Leifsonia ginsengi Qiu et al. 2007, Leifsonia sp. wged11, NBRC 104580, strain wged11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.