STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_A0035Transcriptional regulator, IclR-family. (184 aa)    
Predicted Functional Partners:
alpH
Allophanate hydrolase.
  
    0.709
pcaH1
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.693
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.684
h16_B0167
Transcriptional regulator, IclR-family.
  
     0.614
h16_B2545
Transcriptional regulator, IclR-family.
  
     0.598
h16_A1232
Transcriptional regulator, IclR-family.
  
     0.595
pcaH3
Protocatechuate 3,4-dioxygenase beta subunit.
 
   
 0.573
h16_B1799
Protocatechuate 3,4-dioxygenase beta subunit like protein.
 
   
 0.573
pcpA
6-Chlorohydroxyquinol-1,2-dioxygenase.
 
   
 0.562
pcaCD
3-Oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase.
 
   
 0.559
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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