STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_A0310Transcriptional regulator, GntR-family. (240 aa)    
Predicted Functional Partners:
nagA
N-Acetylglucosamine-6-phosphate deacetylase.
 
  
 0.827
nagE
Protein-N(pi)-phosphohistidine-sugar phosphotransferase II ABC, N-acetylglucosamine-specific; 14 TMHs.
 
   
 0.787
h16_A1538
Transcriptional regulator, GntR-family.
 
     0.775
phnF
Regulator of phosphonate operon, GntR-family.
  
     0.750
h16_A1298
Transcriptional regulator, GntR-family.
  
     0.698
h16_A0246
5,10-Methylenetetrahydrofolate reductase; Deleted EC_number 1.7.99.5; Belongs to the methylenetetrahydrofolate reductase family.
      
 0.617
h16_A1320
Transcriptional regulator, GntR-family.
  
  
 0.615
h16_A1563
Transcriptional regulator, GntR-family.
  
  
 0.600
nagB
Glucosamine-6-phosphate deaminase.
 
  
 0.594
h16_A1693
Transcriptional regulator, LacI-family.
  
   
 0.565
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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