STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiCN-Acetylmuramoyl-L-alanine amidase. (500 aa)    
Predicted Functional Partners:
h16_A0596
Predicted ATPase or kinase.
  
 
 0.856
h16_A1128
Membrane protein.
  
 
 0.740
h16_A2731
Uncharacterized conserved protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.687
h16_A0160
Cell division protein ftsN.
 
 
 0.681
h16_A2374
Metallopeptidase, M23B subfamily.
 
  
 0.678
h16_A0755
Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
 
 
 0.673
h16_A1170
Putative peptidase, M23B subfamily.
 
  
 0.661
h16_A0834
Conserved hypothetical protein.
   
 
 0.624
h16_B0674
Conserved hypothetical protein.
   
 
 0.624
h16_B1664
Putative fatty acyl CoA synthetase; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.624
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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