STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_A0678Conserved hypothetical protein. (64 aa)    
Predicted Functional Partners:
h16_A0679
Lactate dehydrogenase or related dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.572
h16_A2450
Conserved hypothetical membrane spanning protein; 4 TMHs.
  
     0.466
rseA
Negative regulator of sigma24 activity.
  
     0.462
coxM
Bb3-type cytochrome oxidase, subunit II; Signal peptide.
 
     0.459
modA
ABC-type transporter, periplasmic component: MolT family.
       0.439
h16_A0680
Nucleoside 2-deoxyribosyltransferase.
       0.426
h16_A3008
Predicted permease; 9 TMHs.
  
     0.422
modB
ABC-type transporter, permease component: MolT family; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.417
aspT
Putative aspartate:alanine antiporter; 11 TMHs.
  
     0.413
modC
ABC-type transporter, ATPase component: MolT family.
       0.407
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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