STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadA3D-amino-acid dehydrogenase. (449 aa)    
Predicted Functional Partners:
paaJ
3-Ketoacyl-CoA-thiolase P-44/SCP2; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.781
h16_A0839
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
  
 0.726
gabT
4-Aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.653
aptA
Omega-amino acid-pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.569
hcaD
Uncharacterized NAD(FAD)-dependent dehydrogenase.
  
 
 0.467
h16_B0802
Pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.467
h16_A0842
Transcriptional regulator, TetR/AcrR-family.
       0.454
h16_A0838
Conserved hypothetical protein; Function unknown.
  
    0.450
h16_B1009
Probable bifunctional P-450:NADPH-P450 reductase.
   
 0.441
icd1
Isocitrate dehydrogenase [NADP].
  
 
 0.438
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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