STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfnB1Nitroreductase. (195 aa)    
Predicted Functional Partners:
mhpC
Predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily); 1 TMHs.
  
 
 0.914
h16_B0640
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
  
  
 0.677
h16_A1799
Putative NAD(P)H nitroreductase YDGI.
  
     0.565
h16_A1141
Predicted permease, DMT superfamily; 10 TMHs.
       0.551
h16_A1544
Amidase related to nicotinamidase.
 
  
 0.532
h16_A0942
ABC-type transporter, permease component: QAT family; 5 TMHs.
      0.521
h16_B0814
Amidase related to nicotinamidase.
 
  
 0.497
h16_A0421
ABC-type transporter, permease component; 6 TMHs.
  
  
 0.490
h16_A2603
ABC-type transporter, permease component: LOSE family; 6 TMHs.
  
  
 0.490
h16_A3420
ABC-2-type transporter, permease component; 7 TMHs.
  
  
 0.490
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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