STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_A1207Uncharacterized conserved protein; Function unknown. (368 aa)    
Predicted Functional Partners:
rplP
LSU ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.762
slpA
FKBP-type peptidyl-prolyl cis-trans isomerase 2.
       0.605
sdhD
Succinate dehydrogenase (hydrophobic anchor subunit).
  
     0.550
h16_A2706
Protein of unknown function; Belongs to the UPF0307 family.
  
     0.550
h16_A0974
Uncharacterized protein conserved in bacteria.
  
     0.495
h16_A2672
Benzoate transporter (APC superfamily, BenE family); 10 TMHs.
  
    0.491
h16_A0426
Enzyme related to GTP cyclohydrolase I; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
    0.468
argS
Arginyl-tRNA synthetase.
   
    0.450
h16_A3614
Cytochrome c555.
  
     0.447
sdhC
Succinate dehydrogenase (cytochrome b subunit).
  
     0.408
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.