STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_A1259D-Galactarate dehydratase. (96 aa)    
Predicted Functional Partners:
h16_A1258
D-Galactarate dehydratase.
 
     0.946
rspA
L-Alanine-DL-glutamate epimerase, muconate lactonizing enzyme.
 
 
 0.923
h16_A1256
Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
   
 0.832
h16_A1257
Transcriptional regulator, GntR-family.
 
   
 0.822
kdgK
2-Keto-3-deoxygluconate kinase.
    
 0.822
kguK
Putative 2-Ketogluconate kinase; High homologies to 2-keto-3-deoxygluconate kinase kdgk and to ribokinase family.
    
 0.819
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.803
cbbE2
Ribulose-phosphate 3-epimerase; Catalyzes the reversible epimerization of D-ribulose 5- phosphate to D-xylulose 5-phosphate; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.803
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
h16_B0321
Altronate dehydratase.
  
     0.775
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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