STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_A1412Benzoate-coenzyme A ligase. (551 aa)    
Predicted Functional Partners:
h16_A1114
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.937
h16_A1772
Benzaldehyde dehydrogenase [NAD+].
  
 0.937
h16_A1411
Shikimate kinase containing a XRE-type HTH DNA-binding domain; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
 
 
 0.910
benC
Benzoate 1,2-dioxygenase electron transfer component.
    
 0.909
h16_A1956
Carbon-nitrogen hydrolase.
  
 
  0.907
h16_A1469
Amidase; Belongs to the amidase family.
  
 
  0.904
h16_A1732
Amidase; Belongs to the amidase family.
  
 
  0.904
h16_A3386
Amidase; Belongs to the amidase family.
  
 
  0.904
h16_B1874
Amidase.
  
 
  0.904
h16_B2307
tRNA amidotransferase subunit A or related amidase.
  
 
  0.904
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.