STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_A1603Predicted spermidine synthase with an N-terminalmembrane domain; 13 TMHs. (881 aa)    
Predicted Functional Partners:
h16_A2204
Spermidine synthase.
 
  
 0.924
speE
Spermidine synthase.
 
  
 0.919
h16_A2643
Spermidine synthase.
    
 0.905
pfs
5-Methylthioadenosine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
    
 0.905
h16_A1592
Hypothetical membrane spanning protein.
     
  0.900
h16_A1604
MoxR-like ATPase.
 
     0.801
h16_A1608
Conserved hypothetical protein containing von Willebrand factor (vWF) type A; 2 TMHs.
 
   
 0.793
h16_A1609
Hypothetical membrane spanning protein.
 
     0.783
h16_A1607
Von Willebrand factor (vWF) type A domain.
 
   
 0.775
h16_A1605
Conserved hypothetical protein.
 
     0.769
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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