STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_A1706Putative peptidase, S08A subfamily. (684 aa)    
Predicted Functional Partners:
mprA
Putative peptidase, S08A subfamily; Belongs to the peptidase S8 family.
 
 
0.749
h16_B0509
Outer membrane receptor, TonB dependent.
   
 
 0.675
h16_A1279
Highly conserved protein containing a thioredoxin domain.
    
 
 0.655
ftsK
DNA segregation ATPase ftsk/spoIIIE proteins; 5 TMHs.
  
 
 0.626
h16_A1582
DNA segregation ATPase FtsK/SpoIIIE related protein.
  
 
 0.626
fimV
Tfp pilus assembly protein FimV.
   
 
 0.566
ctp
C-terminal processing peptidase-3, periplasmic; Belongs to the peptidase S41A family.
  
 
 0.551
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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