STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livG1ABC-type transporter, ATPase component: HAAT family. (255 aa)    
Predicted Functional Partners:
livM1
ABC-type transporter, permease component: HAAT family; 11 TMHs; Belongs to the binding-protein-dependent transport system permease family.
  
 0.994
h16_B2038
ABC-type transporter, permease component: HAAT family; 10 TMHs; Belongs to the binding-protein-dependent transport system permease family.
  
 0.986
h16_A1242
ABC-type transporter, permease component: HAAT family; 8 TMHs; Belongs to the binding-protein-dependent transport system permease family.
  
 0.985
h16_A1416
ABC-type transporter, permease component; 8 TMHs; Belongs to the binding-protein-dependent transport system permease family.
  
 0.980
livM2
ABC-type transporter, permease component: HAAT family; 8 TMHs; Belongs to the binding-protein-dependent transport system permease family.
  
 0.980
livH1
ABC-type transporter, permease component: HAAT family; 8 TMHs; Belongs to the binding-protein-dependent transport system permease family.
  
 0.968
h16_A1541
ABC-type transporter, permease component; 8 TMHs; Belongs to the binding-protein-dependent transport system permease family.
  
 0.964
livM3
ABC-type transporter, permease component: HAAT family; 10 TMHs; Belongs to the binding-protein-dependent transport system permease family.
  
 0.940
livK1
ABC-type transporter, periplasmic component: HAAT family.
 
  
 0.928
h16_A0421
ABC-type transporter, permease component; 6 TMHs.
 
      0.892
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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