STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_A3022ABC-type transporter, periplasmic component. (322 aa)    
Predicted Functional Partners:
h16_A3021
ABC-type transporter, permease component: TauT family; 6 TMHs.
  
 0.969
h16_A3020
ABC-type transporter, ATPase component: NitT family.
  
 0.952
h16_A0469
ABC-type transporter, permease component: TauT family; 5 TMHs.
 
  
 0.838
ssuC1
ABC-type transporter, permease component: TauT family; 6 TMHs.
  
 0.789
tauC2
ABC-type transporter, permease component: TauT family; 6 TMHs.
 
  
 0.784
h16_A0468
ABC-type transporter, ATPase component: TauT family.
  
 0.779
ssuC2
ABC-type sulfonate transporter, permease component; 8 TMHs.
 
  
 0.756
tauC1
ABC-type transporter, permease component: TauT family; 5 TMHs.
 
  
 0.750
h16_A2381
ABC-type transporter, permease component: TauT family; 5 TMHs.
 
  
 0.745
h16_B2245
ABC-type transporter, permease component: TauT family; 6 TMHs.
 
  
 0.712
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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