STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrgAPutative effector of murein hydrolase LrgA; 2 TMHs. (125 aa)    
Predicted Functional Partners:
lrgB
Putative effector of murein hydrolase LrgB; 5 TMHs.
 
  
 0.994
glcF
2-Hydroxy-acid oxidase, Fe-S subunit.
       0.570
h16_A3100
Predicted enzyme related to lactoylglutathione lyase.
       0.546
h16_A3101
Transcriptional regulator, DeoR-family.
       0.499
glcE
2-Hydroxy-acid oxidase, FAD-binding subunit.
  
    0.494
glcD1
Glycolate oxidase subunit GlcD.
  
    0.448
kch
Ion transport protein, VIC superfamily; 6 TMHs.
     
 0.442
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.