STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompW1Porin, OmpW family. (240 aa)    
Predicted Functional Partners:
hemN
Oxygen-independent coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX.
 
  
 0.762
ccoO
Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs.
 
  
 0.741
ccoN
Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.712
ccoG
Polyferredoxin; 5 TMHs.
 
    0.647
trxB1
Thioredoxin reductase.
     
 0.624
h16_A1121
Cytochrome c553.
 
  
 0.599
fnr3
Transcriptional regulator, FNR-like.
  
  
 0.521
ccoP
Cbb3-type cytochrome oxidase, diheme subunit IV; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.508
h16_B2332
Conserved hypothetical protein.
  
  
 0.506
h16_A3182
Outer membrane receptor, TonB dependent.
  
   
 0.489
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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