STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_B0043Conserved hypothetical protein; Signal peptide. (105 aa)    
Predicted Functional Partners:
h16_B0044
Conserved hypothetical protein.
       0.572
sunT
ABC-type protein transporter, ATPase, permease and peptidase components: Prot1E family; 7 TMHs.
  
  
 0.508
cyaA
Putative AMP or GMP cyclase containing FHA domain.
  
  
 0.507
fliN
Flagellar motor switch protein/type III secretory pathway protein.
   
 
 0.496
fimB
Fimbrial assembly chaperone.
  
  
 0.489
fimD
Outer membrane fimbrial usher porin, FUP family.
   
  
 0.480
rtxB2
ABC-type RTX toxin transporter, ATPase and permease components: Prot1E family; 6 TMHs.
  
  
 0.468
h16_B1022
Putative peptidase.
  
  
 0.468
cA
Recobination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.452
h16_A2687
FOG: FHA domain protein.
  
  
 0.449
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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