STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ohrRTranscriptional regulator, MarR-family. (158 aa)    
Predicted Functional Partners:
ohr
Organic hydroperoxide resistance protein.
  
 0.887
h16_A2295
Transcriptional regulator, MarR-family.
  
     0.765
rpoH
DNA-directed RNA polymerase sigma subunit (RpoH); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
  
 0.635
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.632
cysB
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.628
iscR
Transcriptional regulator of iron sulfur clusterassembly (IscR).
     
 0.624
oxyR
Oxidative stress-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
   
  
 0.616
cysD
Sulfate adenylyltransferase subunit 2.
      
 0.608
cysH2
Sulfate adenylyltransferase subunit 2.
      
 0.608
clpB1
ATP-dependent protease Clp, ATPase subunit; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
  
  
 0.526
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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