STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_B0397Acyl dehydratase. (151 aa)    
Predicted Functional Partners:
h16_B0395
Acyl-CoA dehydrogenase.
 
 0.842
h16_B0396
Acyl-CoA dehydrogenase.
  
 0.840
h16_B0394
Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.793
katE1
Catalase; Belongs to the catalase family.
   
 0.639
katE2
Catalase.
   
 0.639
boxR
Transcriptional Regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
      
 0.601
h16_A2377
NADPH:quinone oxidoreductase.
 
 0.582
h16_B0722
Acyl-CoA dehydrogenase.
 
 0.574
h16_B0665
Acyl-CoA dehydrogenase.
 
 0.568
icd1
Isocitrate dehydrogenase [NADP].
  
 0.548
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.